Cell Ranger on Badran Elshenawy https://badran-elshenawy.netlify.app/tags/cell-ranger/ Recent content in Cell Ranger on Badran Elshenawy Hugo en Wed, 02 Sep 2026 09:00:00 +0000 The Loupe Ecosystem – Post 2: That .cloupe File Has Been in Your outs Folder This Whole Time https://badran-elshenawy.netlify.app/posts/loupe-ecosystem-post-2-loupe-browser-capabilities/ Wed, 02 Sep 2026 09:00:00 +0000 https://badran-elshenawy.netlify.app/posts/loupe-ecosystem-post-2-loupe-browser-capabilities/ Local differential expression, Moran’s I, Visium HD segmentation, and the manual aligner. Loupe bookends your spatial pipeline rather than trailing it. The Loupe Ecosystem – Post 1: The Fastest Way to Actually Look at Your Single Cell Data https://badran-elshenawy.netlify.app/posts/loupe-ecosystem-post-1-point-and-click-eda/ Thu, 27 Aug 2026 09:00:00 +0000 https://badran-elshenawy.netlify.app/posts/loupe-ecosystem-post-1-point-and-click-eda/ Exploratory analysis is a latency problem. When a question costs 200ms instead of 90 seconds, you ask fifty instead of five.